Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042203.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7766709 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 17947 | 0.23107599370595705 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 17887 | 0.23030346572789068 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 10404 | 0.13395635139671128 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6880 | 0.0 | 19.441133 | 1 |
TATACTG | 1605 | 0.0 | 16.713396 | 5 |
TATACCG | 400 | 0.0 | 16.1875 | 5 |
GACGGAC | 1115 | 0.0 | 16.09417 | 7 |
ACGGACC | 1170 | 0.0 | 15.653847 | 8 |
TCTATAC | 1200 | 0.0 | 14.8 | 3 |
CTAGTAC | 605 | 0.0 | 14.066115 | 3 |
AGACGGA | 1405 | 0.0 | 13.957295 | 6 |
GTATCAA | 9565 | 0.0 | 13.925772 | 2 |
TCTAGCG | 495 | 0.0 | 13.828283 | 28 |
CGGACCA | 1285 | 0.0 | 13.677043 | 9 |
AAGACGG | 1570 | 0.0 | 13.550956 | 5 |
CGCAAGA | 1295 | 0.0 | 13.285714 | 2 |
GTATTAG | 2270 | 0.0 | 13.284141 | 1 |
TACACTG | 2620 | 0.0 | 13.133588 | 5 |
TATATCG | 525 | 0.0 | 13.0380945 | 5 |
TTAACGG | 445 | 0.0 | 12.88764 | 35 |
GCGAAAG | 1380 | 0.0 | 12.735507 | 18 |
TAACGCC | 795 | 0.0 | 12.566037 | 4 |
CTAGCGG | 560 | 0.0 | 12.553571 | 29 |