FastQCFastQC Report
Thu 28 Apr 2016
ERR1042203.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042203.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7766709
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT179470.23107599370595705No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT178870.23030346572789068No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT104040.13395635139671128No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA68800.019.4411331
TATACTG16050.016.7133965
TATACCG4000.016.18755
GACGGAC11150.016.094177
ACGGACC11700.015.6538478
TCTATAC12000.014.83
CTAGTAC6050.014.0661153
AGACGGA14050.013.9572956
GTATCAA95650.013.9257722
TCTAGCG4950.013.82828328
CGGACCA12850.013.6770439
AAGACGG15700.013.5509565
CGCAAGA12950.013.2857142
GTATTAG22700.013.2841411
TACACTG26200.013.1335885
TATATCG5250.013.03809455
TTAACGG4450.012.8876435
GCGAAAG13800.012.73550718
TAACGCC7950.012.5660374
CTAGCGG5600.012.55357129