FastQCFastQC Report
Thu 28 Apr 2016
ERR1042201.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042201.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4662008
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTA4400.019.34090830
TCTAGCG3000.017.88333328
TTAACGG2000.017.57535
GTACTAG2900.016.5862061
TTATACG1901.8189894E-1216.55263135
TAACGCC5950.016.1680664
TCTAACG957.0670765E-515.5789482
CGTTTAT5750.015.44347831
CTAGTAC3850.015.3766233
TCTATAC6850.015.1240883
GGTATCA32850.015.0928451
TAGACCG1353.9794213E-715.0740755
ATCGCCG5450.014.93578116
ATAACGC7300.014.698633
CTAGCGG3700.014.529
CGCATCG5750.014.4782613
ACGGACC7000.014.0071428
CTAACGC1203.3046137E-513.8750013
TCGCCGG6000.013.87517
TACGTAG2800.013.87514
Produced by FastQC (version 0.11.5)