Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042198.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1929411 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5340 | 0.27676840237772043 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4724 | 0.24484156045549654 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2348 | 0.12169517018406135 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 1560 | 0.0 | 25.141026 | 1 |
TATACCG | 70 | 5.1048864E-6 | 21.142857 | 5 |
ATAACGC | 185 | 0.0 | 20.0 | 3 |
TAACGCT | 95 | 3.608955E-6 | 17.526316 | 4 |
GTATCAA | 2255 | 0.0 | 17.4745 | 2 |
TATACTG | 445 | 0.0 | 16.629215 | 5 |
TAACGCC | 125 | 1.6593003E-7 | 16.28 | 4 |
TAACGCA | 80 | 3.384053E-4 | 16.1875 | 4 |
GTAATAC | 275 | 0.0 | 16.145454 | 3 |
CGAACGT | 70 | 0.002593349 | 15.857142 | 4 |
TTAACGG | 105 | 9.349595E-6 | 15.857142 | 35 |
TCGAACG | 70 | 0.002593349 | 15.857142 | 3 |
TACGCTG | 85 | 5.3664943E-4 | 15.235294 | 5 |
TCGTTTA | 135 | 3.9759107E-7 | 15.074075 | 30 |
GTACGTA | 135 | 3.9759107E-7 | 15.074075 | 13 |
TAACCCG | 75 | 0.0041057495 | 14.8 | 28 |
CTAGTAC | 100 | 1.09397464E-4 | 14.8 | 3 |
GCGGGTA | 75 | 0.0041057495 | 14.8 | 23 |
AATAACG | 150 | 8.1094186E-8 | 14.8 | 2 |
CGGATCG | 115 | 2.2112716E-5 | 14.47826 | 37 |