FastQCFastQC Report
Thu 28 Apr 2016
ERR1042195.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042195.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8475762
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGGAC13650.016.805867
TCGTTTA7900.015.68987330
ACGGACC15000.015.4166668
TATACTG15650.015.3674135
TAGACAG14100.015.2198585
AAGACGG19250.014.99220855
TCTAGCG8050.014.70807528
AGACGGA17550.014.2307696
ATAACGC10650.014.0704223
TAACGCC9550.013.9476454
GGTATCA55150.013.8875791
CGGACCA16950.013.6430689
GTATTAG19000.013.534211
CTAGCGG8650.013.473989529
CGCAAGA18150.013.4545452
CGAACGA5000.013.3216
GCGAAAG17100.013.30701718
CAAGACG20800.013.1634624
CGAAAGC17300.013.04624419
TTATACC9950.013.0150764
Produced by FastQC (version 0.11.5)