Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042190.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1419879 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10365 | 0.7299917809897886 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10026 | 0.7061165071108172 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3850 | 0.27114986558713805 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 2788 | 0.19635475980699763 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 2703 | 0.19036833420312577 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTCGCGT | 235 | 0.0 | 22.829788 | 8 |
TCGCGTA | 235 | 0.0 | 22.829788 | 9 |
GGTATCA | 3055 | 0.0 | 20.891981 | 1 |
TTACTCG | 55 | 5.143914E-4 | 20.181818 | 19 |
GACGGAC | 545 | 0.0 | 20.027523 | 7 |
CGCAAGA | 580 | 0.0 | 19.775862 | 2 |
GCGCAAG | 600 | 0.0 | 19.116667 | 1 |
ACGGACC | 590 | 0.0 | 18.5 | 8 |
AAGACGG | 605 | 0.0 | 18.347107 | 5 |
CGCGTAA | 295 | 0.0 | 18.186441 | 10 |
CGGACCA | 615 | 0.0 | 18.04878 | 9 |
TACACCG | 145 | 1.546141E-10 | 17.862068 | 5 |
AGACGGA | 645 | 0.0 | 17.782946 | 6 |
CTAGACT | 115 | 6.408118E-8 | 17.695652 | 4 |
CGAAAGC | 625 | 0.0 | 17.464 | 19 |
GTATACT | 170 | 5.456968E-12 | 17.411764 | 4 |
GCGTAAC | 340 | 0.0 | 17.411764 | 11 |
GTATCAA | 3685 | 0.0 | 17.37042 | 2 |
GGTCGCG | 320 | 0.0 | 17.34375 | 7 |
ATTGACG | 215 | 0.0 | 17.209303 | 32 |