Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042185.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3773946 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10023 | 0.2655840862587859 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9290 | 0.246161444811346 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4146 | 0.10985848764131761 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 520 | 0.0 | 18.14423 | 8 |
TAGACCG | 95 | 3.610805E-6 | 17.526316 | 5 |
GACGGAC | 600 | 0.0 | 16.65 | 7 |
TATATCG | 235 | 0.0 | 16.531916 | 5 |
CGAACGA | 325 | 0.0 | 16.507692 | 16 |
CGCAAGA | 595 | 0.0 | 16.47899 | 2 |
GGTATCA | 5050 | 0.0 | 16.265347 | 1 |
CGAACGT | 105 | 9.354329E-6 | 15.857144 | 4 |
CGGACCA | 615 | 0.0 | 15.341463 | 9 |
GTATACT | 520 | 0.0 | 15.298077 | 4 |
TTAGACT | 400 | 0.0 | 14.8 | 4 |
TACCGAC | 190 | 4.5656634E-10 | 14.605264 | 7 |
AAGACGG | 830 | 0.0 | 14.487952 | 5 |
ATTGACG | 550 | 0.0 | 14.463635 | 32 |
TCCGATA | 385 | 0.0 | 14.4155855 | 8 |
TATACTG | 690 | 0.0 | 14.210144 | 5 |
TCGTTTA | 330 | 0.0 | 14.015151 | 30 |
AATCGTC | 280 | 0.0 | 13.875001 | 28 |
CTAATCG | 280 | 0.0 | 13.875001 | 26 |
ACGAACG | 405 | 0.0 | 13.703704 | 15 |