Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042183.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1957478 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 4754 | 0.2428635213269319 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 4376 | 0.2235529594713197 | No Hit |
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC | 3870 | 0.19770337137888652 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 3787 | 0.19346322155344786 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 3408 | 0.17410157355536052 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 3380 | 0.17267116156605591 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 3332 | 0.170219026727248 | No Hit |
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAAC | 2657 | 0.135735880556512 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 2578 | 0.131700075300974 | No Hit |
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTAC | 2574 | 0.13149573073107335 | No Hit |
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC | 2528 | 0.1291457681772158 | No Hit |
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCC | 2461 | 0.12572299663137979 | No Hit |
GGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGA | 2269 | 0.11591445727614819 | No Hit |
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG | 2214 | 0.11310471944001414 | No Hit |
GGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC | 2084 | 0.10646352091824277 | No Hit |
GCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGC | 2082 | 0.10636134863329244 | No Hit |
ACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCG | 2063 | 0.10539071192626431 | No Hit |
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG | 2037 | 0.10406247222191002 | No Hit |
GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATG | 2009 | 0.10263206023260543 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC | 2004 | 0.10237662952022959 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 850 | 0.0 | 24.37647 | 1 |
AAGACGG | 725 | 0.0 | 23.986208 | 5 |
CAAGACG | 805 | 0.0 | 22.52174 | 4 |
GACGGAC | 745 | 0.0 | 21.604027 | 7 |
TTAACGG | 60 | 3.7280108E-5 | 21.583332 | 35 |
ACGGACC | 790 | 0.0 | 20.841772 | 8 |
CGCAAGA | 835 | 0.0 | 20.60479 | 2 |
CGGACCA | 875 | 0.0 | 19.45143 | 9 |
AGACGGA | 845 | 0.0 | 19.266273 | 6 |
GCGCAAG | 960 | 0.0 | 18.885416 | 1 |
CTTCGGG | 675 | 0.0 | 18.637037 | 34 |
GCAAGAC | 1065 | 0.0 | 18.065727 | 3 |
GTATCAA | 1155 | 0.0 | 17.77922 | 2 |
CGAACGA | 450 | 0.0 | 17.677778 | 16 |
TTCGGGC | 665 | 0.0 | 17.526316 | 35 |
CCGAACT | 150 | 2.5102054E-10 | 17.266666 | 23 |
GTTCAAA | 890 | 0.0 | 17.25281 | 1 |
GCTTCGG | 710 | 0.0 | 17.197184 | 33 |
GAGCGAA | 950 | 0.0 | 17.136843 | 16 |
ACGCTTC | 725 | 0.0 | 17.096552 | 31 |