Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042181.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11533619 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 22558 | 0.19558475097885583 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 15486 | 0.1342683506365175 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 15147 | 0.1313291170793833 | No Hit |
GCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTAC | 14277 | 0.12378595131328685 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 13666 | 0.11848839466606276 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 13013 | 0.11282668518875125 | No Hit |
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGG | 12094 | 0.10485867445421944 | No Hit |
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACT | 12052 | 0.10449452162413203 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 12018 | 0.10419973123787078 | No Hit |
GTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGA | 11971 | 0.103792226880392 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 4625 | 0.0 | 20.84 | 5 |
CAAGACG | 5015 | 0.0 | 19.29312 | 4 |
GACGGAC | 4925 | 0.0 | 18.669035 | 7 |
ACGGACC | 4925 | 0.0 | 18.593908 | 8 |
CGCAAGA | 5185 | 0.0 | 17.982641 | 2 |
TCGTTTA | 3080 | 0.0 | 17.959415 | 30 |
AGACGGA | 5410 | 0.0 | 17.542515 | 6 |
CGGACCA | 5335 | 0.0 | 17.373009 | 9 |
GGTTATC | 2570 | 0.0 | 17.276264 | 2 |
GCGCAAG | 5435 | 0.0 | 17.053358 | 1 |
GGTATCA | 7110 | 0.0 | 17.016876 | 1 |
CGTTTAT | 3405 | 0.0 | 16.571218 | 31 |
GTAAACG | 3185 | 0.0 | 16.496077 | 27 |
TAACGGC | 480 | 0.0 | 16.1875 | 36 |
TCTAGCG | 2010 | 0.0 | 16.106964 | 28 |
TAAACGC | 3240 | 0.0 | 16.044752 | 28 |
GCAAGAC | 6525 | 0.0 | 16.019157 | 3 |
CGAACGA | 1840 | 0.0 | 15.986413 | 16 |
ACGAACG | 1850 | 0.0 | 15.9 | 15 |
AGGTTAT | 2760 | 0.0 | 15.885869 | 1 |