FastQCFastQC Report
Thu 28 Apr 2016
ERR1042178.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042178.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6824086
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGGAC8850.019.0225987
CGAACGA4750.018.69473616
AAGACGG10100.018.55
CGCAAGA10050.018.223882
ACGGACC9600.017.9218758
TAACGGC4300.017.63953436
GGTATCA35750.017.490911
ACGAACG5350.016.94392415
TTAACGG4800.016.187535
CGGACCA11100.016.09
ATAACGA6200.015.516129512
TAACGCC6950.015.43884854
TCTAGCG5100.014.87254928
ATTGACG10200.014.69117632
ATCGCCG7200.014.38888816
CTAGCGG5300.014.31132129
AACGCCG7500.014.3066665
ATAACGC9400.014.1702143
CGCATCG6450.014.05426413
CCGGTCG7500.013.81333320
Produced by FastQC (version 0.11.5)