FastQCFastQC Report
Thu 28 Apr 2016
ERR1042167.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042167.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5281132
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA24450.021.1860941
ACGGACC11100.016.8333348
GACGGAC11350.015.9735687
GTATCAA33200.015.6581332
CGACGGT7150.015.2657357
TACGACG7050.015.2198595
CGCAAGA12700.015.1496062
CAAGACG14600.014.6986314
CGGACCA13000.014.6576919
ACGACGG7500.014.5533346
GCGCAAG14250.014.540351
TACCGTC8550.014.4970767
AAGACGG14100.014.4326255
CGAACGA4800.014.26041716
AGACGGA13250.014.1018876
ACGAACG5100.013.78431315
GACGGTA7850.013.668798
CGTCGTA8450.013.57396410
TATACCG3000.013.5666665
TAGCGTG2051.4279067E-913.5365855
Produced by FastQC (version 0.11.5)