Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042167.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5281132 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2445 | 0.0 | 21.186094 | 1 |
ACGGACC | 1110 | 0.0 | 16.833334 | 8 |
GACGGAC | 1135 | 0.0 | 15.973568 | 7 |
GTATCAA | 3320 | 0.0 | 15.658133 | 2 |
CGACGGT | 715 | 0.0 | 15.265735 | 7 |
TACGACG | 705 | 0.0 | 15.219859 | 5 |
CGCAAGA | 1270 | 0.0 | 15.149606 | 2 |
CAAGACG | 1460 | 0.0 | 14.698631 | 4 |
CGGACCA | 1300 | 0.0 | 14.657691 | 9 |
ACGACGG | 750 | 0.0 | 14.553334 | 6 |
GCGCAAG | 1425 | 0.0 | 14.54035 | 1 |
TACCGTC | 855 | 0.0 | 14.497076 | 7 |
AAGACGG | 1410 | 0.0 | 14.432625 | 5 |
CGAACGA | 480 | 0.0 | 14.260417 | 16 |
AGACGGA | 1325 | 0.0 | 14.101887 | 6 |
ACGAACG | 510 | 0.0 | 13.784313 | 15 |
GACGGTA | 785 | 0.0 | 13.66879 | 8 |
CGTCGTA | 845 | 0.0 | 13.573964 | 10 |
TATACCG | 300 | 0.0 | 13.566666 | 5 |
TAGCGTG | 205 | 1.4279067E-9 | 13.536585 | 5 |