Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042163.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3689951 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4203 | 0.11390395157008859 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2165 | 0.0 | 19.055428 | 1 |
TATACCG | 170 | 8.54925E-11 | 16.32353 | 5 |
ACGGACC | 485 | 0.0 | 15.257732 | 8 |
GACGGAC | 455 | 0.0 | 15.043956 | 7 |
TCTATAC | 480 | 0.0 | 14.645834 | 3 |
GTATAAG | 660 | 0.0 | 14.575757 | 1 |
TATACTG | 870 | 0.0 | 14.45977 | 5 |
CGAACGA | 155 | 1.2123746E-7 | 14.32258 | 16 |
CTACACT | 915 | 0.0 | 13.748634 | 4 |
GTATCAA | 3060 | 0.0 | 13.663399 | 2 |
TCTAGCG | 275 | 0.0 | 13.454546 | 28 |
TTAGACT | 400 | 0.0 | 13.4125 | 4 |
CGGACCA | 595 | 0.0 | 13.369747 | 9 |
CTAGCGG | 280 | 0.0 | 13.214286 | 29 |
AAGACGG | 650 | 0.0 | 13.092308 | 5 |
CTATACT | 780 | 0.0 | 13.044872 | 4 |
TTATACT | 900 | 0.0 | 12.949999 | 4 |
GTATTAA | 655 | 0.0 | 12.709924 | 1 |
GTATTAG | 885 | 0.0 | 12.542373 | 1 |
TAGTCGG | 195 | 1.4701254E-7 | 12.333334 | 30 |