FastQCFastQC Report
Thu 28 Apr 2016
ERR1042149.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042149.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1372041
Sequences flagged as poor quality0
Sequence length43
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT385972.8131083546337172No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT273131.9906839518644124No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT221251.6125611406656213No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT111280.8110544801503744No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA46760.340806142090506No Hit
CCACAACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTA39140.28526844314419175No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT38090.27761561061221934No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA37950.2765952329412897No Hit
GTACATGGGGGGTTGTGATCACTTCGCCCTCAGCTGTGTTGTG34540.2517417482422173No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA28260.20597052128908683No Hit
GGTATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCC25990.18942582619615594No Hit
TATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCTC25810.18811391204781783No Hit
GTATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCT25130.18315779193187376No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC23690.17266247874516868No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23270.16960134573237973No Hit
ACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCTCAGCTG22170.16158409260364667No Hit
GTACATGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAA21100.15378549183297No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA20920.15247357768463188No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT20540.14970398114925138No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20410.14875648759767382No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19130.13942732032060265No Hit
ACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTACTCTG18430.13432543196595437No Hit
GAGTACATGGGGGGTTGTGATCACTTCGCCCTCAGCTGTGTTG17930.13068122599834844No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG17610.12834893417908064No Hit
CAACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTACTC16440.1198214922148828No Hit
CGCCACAACACAGCTGAGGGCGAAGTGATCACAACCCCCCATG16230.11829092570848831No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT16120.117489200395615No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA15730.11464671974088239No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA15690.1143551832634739No Hit
GCTGAGGGCGAAGTGATCACAACCCCCCATGTACTCTGCGTTG15440.11253308027967095No Hit
GAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAA15200.11078386141522009No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAG15040.1096177155055862No Hit
GAGTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAA14730.10735830780567053No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG14370.10473447950899427No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT14270.10400563831547308No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG14130.10298526064454341No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATAC950.027.2631593
TCCTATA509.092762E-625.9000022
CGCCACA5700.022.0701751
TCGTTTA2600.021.34615330
ACAACAC14800.020.6250023
ATTAGAC450.00382617920.5555573
GTTAGCC450.00382617920.5555573
CTAGTCC450.00382617920.5555573
AATACCG450.00382617920.5555575
AAGACGG4700.020.4680865
CGCAAGA4800.020.4270842
CCACAAC14900.020.2382551
AGCGGTT555.143791E-420.18181831
TCACGTA555.143791E-420.18181825
CACAACA15650.019.6230032
GCCACAA6850.019.1751822
GCGCAAG5350.018.6728971
TAACGGC500.007035558618.536
CGTTATA500.007035558618.52
CAAGACG5350.018.3271034