Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042147.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9514094 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 125534 | 1.3194530136027667 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 94466 | 0.9929058930887166 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 79208 | 0.832533292187359 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35498 | 0.3731096203169739 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 14707 | 0.15458119291232564 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 13522 | 0.14212598698310105 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 13389 | 0.14072806091678305 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11603 | 0.12195591088336945 | No Hit |
GTACATGGGGGGTTGTGATCACTTCGCCCTCAGCTGTGTTGTG | 11528 | 0.12116760671063373 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 10981 | 0.11541824161081443 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 10159 | 0.10677842787763081 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 9905 | 0.10410870441263245 | No Hit |
CCACAACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTA | 9888 | 0.10393002213347903 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 9869 | 0.1037303184097193 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 9515 | 0.10000952271440665 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 3545 | 0.0 | 18.57828 | 5 |
ACGGACC | 3440 | 0.0 | 18.5 | 8 |
GACGGAC | 3460 | 0.0 | 18.17919 | 7 |
CGCAAGA | 3600 | 0.0 | 17.98611 | 2 |
CAAGACG | 3755 | 0.0 | 17.982689 | 4 |
GCGCAAG | 3745 | 0.0 | 17.981308 | 1 |
CGGACCA | 3615 | 0.0 | 17.655602 | 9 |
AGACGGA | 3750 | 0.0 | 17.02 | 6 |
CGAACGA | 1560 | 0.0 | 16.483974 | 16 |
TCTAGCG | 1820 | 0.0 | 16.467031 | 28 |
CTAGCGG | 1860 | 0.0 | 16.112904 | 29 |
CGCCACA | 2040 | 0.0 | 15.779411 | 1 |
TCGTTTA | 2200 | 0.0 | 15.640909 | 30 |
ACGAACG | 1650 | 0.0 | 15.584849 | 15 |
ACAACAC | 5215 | 0.0 | 15.360498 | 3 |
TACGACG | 2480 | 0.0 | 15.292339 | 5 |
GCAAGAC | 4710 | 0.0 | 15.239915 | 3 |
GCGAAAG | 4210 | 0.0 | 15.11639 | 18 |
CGACGGT | 2515 | 0.0 | 15.079523 | 7 |
CGAAAGC | 4230 | 0.0 | 15.001183 | 19 |