Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042144.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 910425 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12335 | 1.3548617403959688 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8909 | 0.9785539720460223 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 7095 | 0.7793063679050993 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3212 | 0.3528022626795178 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 2052 | 0.2253892412884093 | No Hit |
CCACAACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTA | 1509 | 0.16574676661998516 | No Hit |
TATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCTC | 1485 | 0.16311063514292776 | No Hit |
GGTATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCC | 1436 | 0.15772853337726886 | No Hit |
GTATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCT | 1287 | 0.14136255045720406 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 1110 | 0.1219210808139056 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 997 | 0.1095092951094269 | No Hit |
GCTGAGGGCGAAGTGATCACAACCCCCCATGTACTCTGCGTTG | 983 | 0.10797155174781009 | No Hit |
ACGCAGAGTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAA | 981 | 0.10775187412472197 | No Hit |
ACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTACTCTG | 958 | 0.1052255814592086 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAAG | 105 | 9.822543E-10 | 21.142857 | 1 |
TAGGTCG | 80 | 6.9568523E-7 | 20.8125 | 21 |
ACGCGAA | 45 | 0.003825206 | 20.555555 | 34 |
TCTAGCG | 90 | 9.472933E-8 | 20.555555 | 28 |
CGAACGT | 65 | 6.900118E-5 | 19.923075 | 4 |
CGCCACA | 280 | 0.0 | 19.160715 | 1 |
ACAACAC | 760 | 0.0 | 18.986843 | 3 |
ATTAGAC | 80 | 1.6160688E-5 | 18.5 | 3 |
GACGCGA | 50 | 0.007033786 | 18.5 | 33 |
TCGAACG | 70 | 1.2188439E-4 | 18.5 | 3 |
CTAGCGG | 105 | 4.794547E-7 | 17.619047 | 29 |
GTCGTCA | 95 | 3.6047204E-6 | 17.526316 | 24 |
CGTCATT | 95 | 3.6047204E-6 | 17.526316 | 26 |
GCGTGAT | 75 | 2.066672E-4 | 17.266666 | 36 |
ATCGCAG | 75 | 2.066672E-4 | 17.266666 | 11 |
CCACAAC | 800 | 0.0 | 17.112501 | 1 |
CTAGTAC | 155 | 4.0017767E-10 | 16.709679 | 3 |
CATTGCG | 100 | 5.8750884E-6 | 16.650002 | 29 |
TATGCTG | 100 | 5.8750884E-6 | 16.650002 | 5 |
CGCCAAT | 100 | 5.8750884E-6 | 16.650002 | 14 |