FastQCFastQC Report
Thu 28 Apr 2016
ERR1042144.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042144.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences910425
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT123351.3548617403959688No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT89090.9785539720460223No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT70950.7793063679050993No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32120.3528022626795178No Hit
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA20520.2253892412884093No Hit
CCACAACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTA15090.16574676661998516No Hit
TATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCTC14850.16311063514292776No Hit
GGTATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCC14360.15772853337726886No Hit
GTATCAACGCAGAGTACATGGGGGGTTGTGATCACTTCGCCCT12870.14136255045720406No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA11100.1219210808139056No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT9970.1095092951094269No Hit
GCTGAGGGCGAAGTGATCACAACCCCCCATGTACTCTGCGTTG9830.10797155174781009No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAA9810.10775187412472197No Hit
ACACAGCTGAGGGCGAAGTGATCACAACCCCCCATGTACTCTG9580.1052255814592086No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATAAG1059.822543E-1021.1428571
TAGGTCG806.9568523E-720.812521
ACGCGAA450.00382520620.55555534
TCTAGCG909.472933E-820.55555528
CGAACGT656.900118E-519.9230754
CGCCACA2800.019.1607151
ACAACAC7600.018.9868433
ATTAGAC801.6160688E-518.53
GACGCGA500.00703378618.533
TCGAACG701.2188439E-418.53
CTAGCGG1054.794547E-717.61904729
GTCGTCA953.6047204E-617.52631624
CGTCATT953.6047204E-617.52631626
GCGTGAT752.066672E-417.26666636
ATCGCAG752.066672E-417.26666611
CCACAAC8000.017.1125011
CTAGTAC1554.0017767E-1016.7096793
CATTGCG1005.8750884E-616.65000229
TATGCTG1005.8750884E-616.6500025
CGCCAAT1005.8750884E-616.65000214