Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042143.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4741042 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 39824 | 0.8399841216340206 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 27223 | 0.5741986677190373 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 21827 | 0.4603840252838933 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9774 | 0.20615721185342797 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 4997 | 0.1053987709874749 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 4773 | 0.10067407122737998 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTAAACG | 740 | 0.0 | 17.75 | 27 |
ACGGACC | 1065 | 0.0 | 17.71831 | 8 |
GACGGAC | 1065 | 0.0 | 17.544601 | 7 |
CGAACGA | 585 | 0.0 | 16.760685 | 16 |
CGGACCA | 1165 | 0.0 | 16.67382 | 9 |
TAAACGC | 825 | 0.0 | 16.59394 | 28 |
TAGAGTG | 695 | 0.0 | 15.705036 | 5 |
ACGCTTC | 860 | 0.0 | 15.703488 | 31 |
AGACGGA | 1270 | 0.0 | 15.586615 | 6 |
CGCAAGA | 1250 | 0.0 | 15.392 | 2 |
AAGACGG | 1310 | 0.0 | 15.110687 | 5 |
CGCCACA | 1030 | 0.0 | 14.907766 | 1 |
ATTAGAG | 875 | 0.0 | 14.8 | 3 |
TTCGGGC | 975 | 0.0 | 14.610256 | 35 |
TTAGAGT | 660 | 0.0 | 14.575757 | 4 |
GCGAAAG | 1305 | 0.0 | 14.45977 | 18 |
CTTCGGG | 1000 | 0.0 | 14.429999 | 34 |
CTAGCGG | 605 | 0.0 | 14.371901 | 29 |
CTAGTAC | 335 | 0.0 | 14.358208 | 3 |
TTAACGG | 245 | 0.0 | 14.34694 | 35 |