FastQCFastQC Report
Thu 28 Apr 2016
ERR1042141.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042141.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3555203
Sequences flagged as poor quality0
Sequence length43
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT1668894.694218586111679No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT943572.654053791021216No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT750662.1114406125332366No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT688891.9376952595955843No Hit
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA292690.8232722575897916No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA231120.650089460433061No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA226240.6363630993785727No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT183770.51690437929986No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT156940.44143752128922037No Hit
GAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA149710.42110112980890263No Hit
GAGTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAA132660.3731432494853318No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT131310.3693459979641106No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAA119930.33733657402966866No Hit
GAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAA100280.2820654685541163No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT97030.2729239371141395No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAA96450.2712925253494667No Hit
GAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAAAAAAAAAA93510.26302295536991843No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA88520.2489871886359232No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80340.22597865719622764No Hit
CATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAAAAA77380.21765283163858715No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT73640.20713303853535225No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA71050.19984794117241686No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG66830.18797801419497No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACAAAAAA63130.17757073224791947No Hit
ACGCAGAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAA61110.17188891886061075No Hit
GAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAA59380.16702281135563848No Hit
GTACATGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAA56890.1600189918831639No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACAAAA55900.15723434076760173No Hit
GAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA55230.15534977890151422No Hit
CAGTGGTATCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA53840.15144001622410871No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT46780.1315817971575744No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAA46760.13152554157948224No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACAAAAA43120.12128702636670817No Hit
GAGTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAA40440.11374877890235804No Hit
GAGTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAA39010.10972650506876822No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTATA1501.2732926E-1118.52
GAACAGT71500.016.9475521
TATACTG3950.016.860765
CGCCACA4300.016.779071
AACAGTG71800.016.541782
CAATGCG1251.6604645E-716.27999919
GGACTTT22400.016.0223223
CGGTATA700.00259392515.85714326
ACGAACG1059.354031E-615.85714215
ACAGTGG76700.015.7503253
GACGGAC2150.015.4883727
TCTAGCG1201.9381769E-615.41666728
GAGGACT23500.015.272341
GACTTTT23550.015.2399154
ACGTTCG855.368074E-415.2352947
GTACTAG1853.0559022E-1015.01
AGGACTT24200.014.8305782
TATCACT8750.014.833
CGAACGA1001.0943866E-414.816
ATGCGAC1508.116149E-814.821