Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042140.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2639208 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25350 | 0.9605154273554795 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 18041 | 0.6835762850067141 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12760 | 0.4834783768463873 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 7063 | 0.26761816423714996 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3046 | 0.1154134119023586 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 2969 | 0.11249586997311314 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2710 | 0.1026823198474694 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2691 | 0.10196240690388936 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 790 | 0.0 | 18.968353 | 8 |
GACGGAC | 800 | 0.0 | 18.9625 | 7 |
GTATACT | 295 | 0.0 | 18.186441 | 4 |
CGGACCA | 815 | 0.0 | 18.159512 | 9 |
CAAGACG | 905 | 0.0 | 17.78453 | 4 |
GCGCAAG | 935 | 0.0 | 17.411766 | 1 |
CGCAAGA | 910 | 0.0 | 17.28022 | 2 |
CGAAAGC | 905 | 0.0 | 16.76243 | 19 |
GCGAAAG | 915 | 0.0 | 16.377048 | 18 |
AGACGGA | 945 | 0.0 | 16.248678 | 6 |
ACCGTCG | 240 | 0.0 | 16.1875 | 8 |
TACCGTC | 220 | 0.0 | 15.977273 | 7 |
AAGACGG | 1050 | 0.0 | 15.857142 | 5 |
AGCGAAA | 950 | 0.0 | 15.7736845 | 17 |
GCTAGAC | 190 | 2.7284841E-11 | 15.578948 | 3 |
TATAGTG | 285 | 0.0 | 15.578947 | 5 |
TACGACC | 110 | 1.4532079E-5 | 15.136364 | 4 |
GGTATCA | 8400 | 0.0 | 15.086309 | 1 |
TCGTATA | 75 | 0.0041062804 | 14.8 | 2 |
GTAAGAC | 300 | 0.0 | 14.8 | 3 |