Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042137.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9893034 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 63999 | 0.6469097346678481 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 44502 | 0.44983166943528147 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 39635 | 0.4006354370155809 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26328 | 0.2661266503278974 | No Hit |
GTACATGGGAAGCAGTGGTATCAACAAAAAAAAAAAAAAAAAA | 11230 | 0.11351421616462654 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 1225 | 0.0 | 14.195918 | 8 |
GACGGAC | 1230 | 0.0 | 13.8373995 | 7 |
TATACTG | 2010 | 0.0 | 13.805969 | 5 |
CTATACT | 2155 | 0.0 | 12.61949 | 4 |
GGTATCA | 27810 | 0.0 | 12.300072 | 1 |
TCTATAC | 1400 | 0.0 | 12.289286 | 3 |
TCTAGCG | 615 | 0.0 | 12.032521 | 28 |
TCTAGAC | 1090 | 0.0 | 11.8807335 | 3 |
GTACATG | 35165 | 0.0 | 11.858097 | 1 |
AAGACGG | 1625 | 0.0 | 11.726153 | 5 |
TACATGG | 35445 | 0.0 | 11.701792 | 2 |
TACCGTC | 730 | 0.0 | 11.657535 | 7 |
CGCGTAT | 175 | 7.3478495E-6 | 11.628571 | 12 |
AACGCAG | 34145 | 0.0 | 11.627178 | 5 |
GTATTAG | 2375 | 0.0 | 11.528421 | 1 |
TAGACTG | 1450 | 0.0 | 11.4827585 | 5 |
GTATAGG | 1225 | 0.0 | 11.477551 | 1 |
CGGGTAA | 500 | 0.0 | 11.469999 | 24 |
CATGGGA | 22785 | 0.0 | 11.407724 | 4 |
ACATGGG | 35910 | 0.0 | 11.3648 | 3 |