Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042131.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3107041 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32777 | 1.0549265362124285 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 29763 | 0.9579210573661564 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20046 | 0.6451797707207597 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13008 | 0.41866200027614703 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 3800 | 0.12230285985926803 | No Hit |
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG | 3364 | 0.10827021593857306 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 3354 | 0.10794836630736446 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 10500 | 0.0 | 22.129524 | 1 |
TACGACG | 420 | 0.0 | 17.178572 | 5 |
CAACGCG | 70 | 0.0025938267 | 15.857142 | 4 |
ACGGACC | 390 | 0.0 | 15.653847 | 8 |
GACGGAC | 415 | 0.0 | 15.602409 | 7 |
GTATCAA | 15055 | 0.0 | 15.593823 | 2 |
CGTCGTG | 395 | 0.0 | 15.455696 | 30 |
ATCGCTC | 545 | 0.0 | 15.275229 | 16 |
CGAACGA | 510 | 0.0 | 15.235294 | 16 |
GACGGTA | 470 | 0.0 | 14.957447 | 8 |
TAGACCG | 410 | 0.0 | 14.8902445 | 25 |
TATACCG | 125 | 2.9624898E-6 | 14.799999 | 5 |
AAGACGG | 415 | 0.0 | 14.710843 | 5 |
GTCGTGA | 390 | 0.0 | 14.705129 | 31 |
CAAATCG | 570 | 0.0 | 14.605264 | 13 |
AAATCGC | 585 | 0.0 | 14.547008 | 14 |
ATAACGC | 565 | 0.0 | 14.407079 | 3 |
GCGGGTA | 515 | 0.0 | 14.368933 | 23 |
ACGGTAT | 490 | 0.0 | 14.34694 | 9 |
GCGCAAG | 455 | 0.0 | 14.230769 | 1 |