Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042129.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7924738 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 66190 | 0.8352326600576575 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 59966 | 0.7566937859649114 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 38781 | 0.48936633614890485 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 25415 | 0.3207046087832809 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 9929 | 0.12529120836550053 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 8163 | 0.10300655996450607 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 8070 | 0.10183301959004827 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 2260 | 0.0 | 19.236727 | 8 |
AAGACGG | 2455 | 0.0 | 18.989817 | 5 |
GACGGAC | 2275 | 0.0 | 18.947252 | 7 |
CGGACCA | 2445 | 0.0 | 18.00818 | 9 |
CAAGACG | 2540 | 0.0 | 17.55315 | 4 |
TCTAGCG | 1170 | 0.0 | 16.918804 | 28 |
CGCAAGA | 2645 | 0.0 | 16.716446 | 2 |
GTAAACG | 1405 | 0.0 | 16.590748 | 27 |
CTAGCGG | 1190 | 0.0 | 16.32353 | 29 |
AGACGGA | 2715 | 0.0 | 16.28545 | 6 |
GCGCAAG | 2745 | 0.0 | 16.107468 | 1 |
GGTATCA | 27105 | 0.0 | 16.066776 | 1 |
TCGTTTA | 1425 | 0.0 | 15.189474 | 30 |
CGCTTCG | 1575 | 0.0 | 15.152381 | 32 |
TATACTG | 1385 | 0.0 | 15.093863 | 5 |
TTCGGGC | 1545 | 0.0 | 15.087378 | 35 |
GTATTAG | 2040 | 0.0 | 15.053922 | 1 |
TAAACGC | 1530 | 0.0 | 14.9934635 | 28 |
CGAGCCG | 2165 | 0.0 | 14.612008 | 15 |
GCGAAAG | 2915 | 0.0 | 14.596912 | 18 |