Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042127.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2322911 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 23750 | 1.0224240188280997 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23010 | 0.9905674388730348 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 15053 | 0.6480231054913426 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9243 | 0.3979059034117106 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 4547 | 0.1957457689941629 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 4453 | 0.19169912235122225 | No Hit |
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG | 3311 | 0.14253667058273 | No Hit |
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC | 2990 | 0.1287178027914113 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 2699 | 0.11619041797124384 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 2582 | 0.11115363438375384 | No Hit |
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC | 2326 | 0.10013297969659622 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9480 | 0.0 | 18.87078 | 1 |
TTAGCGA | 50 | 0.0070369914 | 18.5 | 27 |
TCGTCGG | 50 | 0.0070369914 | 18.5 | 13 |
CTAGCGG | 285 | 0.0 | 18.175438 | 29 |
ACGGACC | 495 | 0.0 | 17.939394 | 8 |
AAGACGG | 535 | 0.0 | 17.289719 | 5 |
CGAACGT | 75 | 2.0684121E-4 | 17.266666 | 4 |
TACTCCG | 150 | 2.5102054E-10 | 17.266666 | 5 |
GACGGAC | 530 | 0.0 | 17.103773 | 7 |
CGCAATA | 335 | 0.0 | 16.567163 | 36 |
GTGTAAG | 475 | 0.0 | 16.357895 | 1 |
TCTAGCG | 325 | 0.0 | 15.938462 | 28 |
CAAGACG | 665 | 0.0 | 15.857143 | 4 |
ACACGCT | 1185 | 0.0 | 15.767932 | 9 |
CGAACTA | 95 | 7.0646354E-5 | 15.578948 | 29 |
CTTCGGG | 370 | 0.0 | 15.5 | 34 |
AGACGGA | 610 | 0.0 | 15.467214 | 6 |
TAGACAG | 290 | 0.0 | 15.310346 | 5 |
CGGACCA | 580 | 0.0 | 15.310346 | 9 |
ACGAACG | 510 | 0.0 | 15.235294 | 15 |