Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042124.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3554773 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 36481 | 1.0262539970906723 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 32049 | 0.9015765563652025 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 18858 | 0.5304980092962336 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14147 | 0.3979719661424232 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 7100 | 0.19973145964594644 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 6226 | 0.17514479827544543 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 5806 | 0.1633296978456852 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 5653 | 0.1590256255462726 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 5445 | 0.15317433771439132 | No Hit |
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG | 5004 | 0.1407684822631431 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 4808 | 0.13525476872925501 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 4525 | 0.12729364153491657 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 4376 | 0.12310209400150163 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 4101 | 0.11536601633915865 | No Hit |
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG | 4096 | 0.11522536038166149 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 4041 | 0.1136781448491929 | No Hit |
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC | 3927 | 0.110471189018258 | No Hit |
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG | 3796 | 0.10678600293183278 | No Hit |
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC | 3672 | 0.10329773518590356 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 1200 | 0.0 | 21.583334 | 5 |
CAAGACG | 1285 | 0.0 | 20.731518 | 4 |
ACGGACC | 1320 | 0.0 | 19.060606 | 8 |
CGCAAGA | 1340 | 0.0 | 19.052238 | 2 |
GACGGAC | 1345 | 0.0 | 18.568773 | 7 |
CTAGCGT | 50 | 0.0070377076 | 18.5 | 4 |
GCGCAAG | 1400 | 0.0 | 18.235714 | 1 |
CGGACCA | 1380 | 0.0 | 18.231884 | 9 |
AGACGGA | 1460 | 0.0 | 17.232878 | 6 |
CTAGCGG | 420 | 0.0 | 17.178572 | 29 |
TCGTTTA | 865 | 0.0 | 17.109827 | 30 |
GCAAGAC | 1770 | 0.0 | 17.036722 | 3 |
TCTAGCG | 425 | 0.0 | 16.97647 | 28 |
TATACTG | 635 | 0.0 | 16.606298 | 5 |
TAACGGC | 190 | 1.8189894E-12 | 16.552631 | 36 |
TTAACGG | 185 | 1.8189894E-11 | 16.0 | 35 |
ACACGCT | 1805 | 0.0 | 15.886427 | 9 |
TAATACT | 645 | 0.0 | 15.775194 | 4 |
CTTCGGG | 875 | 0.0 | 15.645715 | 34 |
GTATGGT | 1375 | 0.0 | 15.607272 | 3 |