Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042118.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3020849 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 22364 | 0.7403216777799884 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21805 | 0.7218169461631482 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 12994 | 0.43014397608089644 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9386 | 0.3107073541246186 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 6408 | 0.21212579642345578 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 6121 | 0.20262515604057002 | No Hit |
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATG | 4762 | 0.15763780314739334 | No Hit |
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC | 4101 | 0.13575653731782025 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 3965 | 0.13125449170084305 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 3791 | 0.12549452157323984 | No Hit |
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC | 3686 | 0.12201867753072067 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 3680 | 0.12182005787114815 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 3544 | 0.11731801225417092 | No Hit |
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG | 3236 | 0.10712220306278136 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9305 | 0.0 | 19.364857 | 1 |
AAGACGG | 715 | 0.0 | 16.55944 | 5 |
ACACGCT | 1885 | 0.0 | 16.193634 | 9 |
TATAACG | 115 | 1.2437577E-6 | 16.086956 | 2 |
ACGCTGA | 1910 | 0.0 | 16.078533 | 11 |
TAACGGC | 265 | 0.0 | 16.056604 | 36 |
GACGGTA | 600 | 0.0 | 16.033333 | 8 |
TACGACG | 635 | 0.0 | 16.023623 | 5 |
CGATAGA | 210 | 0.0 | 15.857142 | 37 |
TCGGTAA | 70 | 0.0025938044 | 15.857142 | 27 |
TATACTG | 445 | 0.0 | 15.797752 | 5 |
GCGGGTA | 685 | 0.0 | 15.664234 | 23 |
ATAACGA | 785 | 0.0 | 15.55414 | 12 |
CACGCTG | 1985 | 0.0 | 15.284635 | 10 |
CGTTCGG | 85 | 5.367742E-4 | 15.235294 | 24 |
ACCCGTT | 985 | 0.0 | 15.213197 | 30 |
CGGACCA | 730 | 0.0 | 15.20548 | 9 |
ATAGGCG | 220 | 1.8189894E-12 | 15.136364 | 32 |
ACGGACC | 735 | 0.0 | 15.10204 | 8 |
TAACGAA | 810 | 0.0 | 15.074074 | 13 |