ERR1042116.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1042116.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	344010
Sequences flagged as poor quality	0
Sequence length	43
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	8722	2.5353914130403186	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	8305	2.4141740065695765	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4517	1.3130432254876312	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	2425	0.7049213685648673	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT	1476	0.4290572948460801	No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1111	0.3229557280311619	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	870	0.25289962501090085	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	827	0.24039998837243104	No Hit
CTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCG	647	0.18807592802534812	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	625	0.18168076509403797	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC	537	0.15610011336879742	No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA	506	0.14708874742013314	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	491	0.1427284090578762	No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	473	0.13749600302316792	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	428	0.1244149879363972	No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT	412	0.11976396034998982	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA	400	0.1162756896601843	No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG	369	0.10726432371152002	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC	361	0.10493880991831632	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAT	35	2.383481E-5	31.714285	25
CTTCGCG	35	2.383481E-5	31.714285	31
TAGACCA	25	0.0054910574	29.599998	5
GTTACAC	25	0.0054910574	29.599998	3
TGTATAG	40	5.9282185E-5	27.750002	3
TAGCCTT	40	5.9282185E-5	27.750002	5
TTCGCGG	40	5.9282185E-5	27.750002	32
TATAGTG	35	8.856714E-4	26.42857	5
TCGTTCG	115	0.0	24.130432	37
GTCTCGT	155	0.0	23.870966	34
TCTCGTT	160	0.0	23.125002	35
CTCACGA	50	2.6967723E-4	22.199999	24
CGACGGG	50	2.6967723E-4	22.199999	14
ACGATCC	50	2.6967723E-4	22.199999	27
CCCTTCG	50	2.6967723E-4	22.199999	29
CGATCCT	50	2.6967723E-4	22.199999	28
AAAGCGG	50	2.6967723E-4	22.199999	14
TCGCGGG	50	2.6967723E-4	22.199999	33
TAGTACC	50	2.6967723E-4	22.199999	6
ACGGGAA	110	7.2759576E-11	21.863636	33