Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042115.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6310540 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 38697 | 0.6132121815248774 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 34785 | 0.551220656235441 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 23436 | 0.3713786775775132 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14627 | 0.23178682014534413 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 7973 | 0.12634417973739173 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 7920 | 0.12550431500315345 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 7603 | 0.1204809731021434 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGACGG | 1535 | 0.0 | 20.60912 | 5 |
ACGGACC | 1555 | 0.0 | 19.511253 | 8 |
GACGGAC | 1575 | 0.0 | 19.498413 | 7 |
TAACGGC | 260 | 0.0 | 19.211538 | 36 |
CAAGACG | 1715 | 0.0 | 18.985422 | 4 |
CGCAAGA | 1700 | 0.0 | 18.935295 | 2 |
CGGACCA | 1655 | 0.0 | 18.444109 | 9 |
GCGCAAG | 1735 | 0.0 | 18.126802 | 1 |
TTAACGG | 290 | 0.0 | 17.86207 | 35 |
GGTATCA | 14605 | 0.0 | 17.708319 | 1 |
AGACGGA | 1895 | 0.0 | 16.30343 | 6 |
TCGTTTA | 1075 | 0.0 | 15.660464 | 30 |
GTAAACG | 985 | 0.0 | 15.401016 | 27 |
TCTAGCG | 915 | 0.0 | 15.163935 | 28 |
TATACTG | 1205 | 0.0 | 14.892116 | 5 |
CTAGCGG | 950 | 0.0 | 14.605263 | 29 |
GCAAGAC | 2705 | 0.0 | 14.499076 | 3 |
CCGGTCG | 1155 | 0.0 | 14.415585 | 20 |
GCGAAAG | 2130 | 0.0 | 14.330986 | 18 |
TTCGGGC | 1060 | 0.0 | 14.136792 | 35 |