Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042114.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2703418 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 6184 | 0.22874745969731652 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 6132 | 0.22682396876842575 | No Hit |
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC | 4661 | 0.17241136960691983 | No Hit |
CCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC | 4459 | 0.16493934715238265 | No Hit |
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAA | 4279 | 0.15828110932160694 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 4183 | 0.15473004914519323 | No Hit |
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG | 3967 | 0.14674016374826238 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 3963 | 0.1465922029075785 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 3826 | 0.14152454411415474 | No Hit |
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC | 3182 | 0.1177028487640461 | No Hit |
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTG | 3157 | 0.11677809350977171 | No Hit |
GCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGC | 3098 | 0.11459567110968412 | No Hit |
ACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAG | 2855 | 0.1056070500381369 | No Hit |
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGG | 2852 | 0.10549607940762398 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 845 | 0.0 | 20.142014 | 7 |
ATAATAC | 120 | 2.401066E-10 | 20.041668 | 3 |
ACGGACC | 875 | 0.0 | 19.239998 | 8 |
AAGACGG | 950 | 0.0 | 19.08421 | 5 |
CAAGACG | 935 | 0.0 | 18.796791 | 4 |
CCTAACG | 50 | 0.0070372825 | 18.5 | 14 |
AGACGGA | 940 | 0.0 | 18.5 | 6 |
TCGTTTA | 680 | 0.0 | 18.227942 | 30 |
CTATACT | 265 | 0.0 | 18.150944 | 4 |
TAATACC | 185 | 0.0 | 18.0 | 4 |
CGTTTAT | 735 | 0.0 | 17.115646 | 31 |
TCTATAC | 185 | 1.8189894E-12 | 17.0 | 3 |
CGGACCA | 1065 | 0.0 | 16.849766 | 9 |
GCGCAAG | 1065 | 0.0 | 16.676056 | 1 |
CTAGATA | 490 | 0.0 | 16.612246 | 3 |
CGCAAGA | 1040 | 0.0 | 16.365385 | 2 |
CTATACA | 160 | 6.311893E-10 | 16.1875 | 4 |
TTAGGAC | 230 | 0.0 | 16.086956 | 3 |
GTTCAAA | 1105 | 0.0 | 16.0724 | 1 |
TAGACAG | 415 | 0.0 | 16.048193 | 5 |