Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042113.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3348327 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 28261 | 0.8440334531245007 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 20575 | 0.6144859806106154 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 12747 | 0.3806975841965256 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8162 | 0.24376352727795103 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 5784 | 0.17274298478016037 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 3942 | 0.11773043672257819 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 3693 | 0.11029388706658579 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 3601 | 0.10754624622983358 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 3583 | 0.10700866432699077 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAAT | 3535 | 0.10557511258607657 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAAGACG | 1235 | 0.0 | 24.417004 | 4 |
ACGGACC | 1230 | 0.0 | 23.613823 | 8 |
AAGACGG | 1315 | 0.0 | 23.072243 | 5 |
GACGGAC | 1255 | 0.0 | 22.996016 | 7 |
CGGACCA | 1325 | 0.0 | 22.199999 | 9 |
AGACGGA | 1345 | 0.0 | 21.869888 | 6 |
CGCAAGA | 1405 | 0.0 | 20.935944 | 2 |
GCGCAAG | 1490 | 0.0 | 20.114094 | 1 |
GCAAGAC | 1575 | 0.0 | 19.498413 | 3 |
TCGTTTA | 760 | 0.0 | 18.743422 | 30 |
GCGAAAG | 1580 | 0.0 | 18.031645 | 18 |
GAGCGAA | 1580 | 0.0 | 18.031645 | 16 |
CGAAAGC | 1585 | 0.0 | 17.974762 | 19 |
AGCGAAA | 1600 | 0.0 | 17.80625 | 17 |
CAGAGCG | 1655 | 0.0 | 17.438066 | 14 |
CGTTTAT | 835 | 0.0 | 17.281437 | 31 |
AGAGCGA | 1680 | 0.0 | 17.178572 | 15 |
CGAGCCG | 1045 | 0.0 | 17.17225 | 15 |
TCTAGCG | 530 | 0.0 | 17.103773 | 28 |
TAACGCC | 910 | 0.0 | 16.263735 | 4 |