Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042109.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2393972 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 35444 | 1.480551986405856 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 25962 | 1.0844738367867293 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 16318 | 0.6816286907282124 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14411 | 0.6019702820250195 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 4660 | 0.1946555765898682 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 4148 | 0.17326852611475824 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 3687 | 0.1540118263705674 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 3664 | 0.15305107996250583 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3151 | 0.13162225790443663 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2810 | 0.11737814811534973 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA | 2654 | 0.11086178117371463 | No Hit |
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA | 2623 | 0.10956686210197948 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 2547 | 0.10639222179708034 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2498 | 0.10434541423207956 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2480 | 0.10359352573881399 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 2429 | 0.10146317500789484 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGTTAA | 35 | 8.872211E-4 | 26.428572 | 1 |
CAAGACG | 805 | 0.0 | 20.913044 | 4 |
AAGACGG | 815 | 0.0 | 20.202456 | 5 |
GACGGAC | 790 | 0.0 | 20.13924 | 7 |
GCGCAAG | 820 | 0.0 | 19.402437 | 1 |
ACGGACC | 825 | 0.0 | 19.28485 | 8 |
CGGACCA | 850 | 0.0 | 18.282354 | 9 |
AGACGGA | 880 | 0.0 | 18.079546 | 6 |
GCAAGAC | 1100 | 0.0 | 17.995453 | 3 |
CGTGCGA | 135 | 1.1532393E-9 | 17.814816 | 32 |
CGCAAGA | 925 | 0.0 | 17.8 | 2 |
ATTGACG | 725 | 0.0 | 17.096552 | 32 |
ACACGCT | 700 | 0.0 | 16.914286 | 9 |
CGATCGG | 135 | 2.2226232E-8 | 16.444445 | 36 |
GTATGGT | 800 | 0.0 | 16.41875 | 3 |
TTGTACG | 80 | 3.3844786E-4 | 16.1875 | 4 |
GTATTAG | 550 | 0.0 | 16.145454 | 1 |
ACGCTGA | 740 | 0.0 | 16.0 | 11 |
GTATAGG | 185 | 1.8189894E-11 | 16.0 | 1 |
ATAATAC | 315 | 0.0 | 15.857142 | 3 |