Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042093.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1627213 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6917 | 0.4250826413014153 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6125 | 0.3764104637807097 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3935 | 0.24182451836360697 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2515 | 0.15455874553607918 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 2440 | 0.1499496378163154 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 1745 | 0.10723857294650423 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCGACG | 45 | 1.3235425E-4 | 24.666666 | 22 |
GGTATCA | 2670 | 0.0 | 21.617977 | 1 |
CGCAAGA | 540 | 0.0 | 19.185184 | 2 |
GACGGAC | 510 | 0.0 | 18.862745 | 7 |
AAGACGG | 545 | 0.0 | 18.330276 | 5 |
ACGGACC | 535 | 0.0 | 18.327103 | 8 |
GTATTAG | 570 | 0.0 | 18.175438 | 1 |
CGGACCA | 550 | 0.0 | 18.163637 | 9 |
CGAACGA | 195 | 0.0 | 18.025642 | 16 |
GCGCAAG | 590 | 0.0 | 17.87288 | 1 |
CTTCGGG | 315 | 0.0 | 17.61905 | 34 |
TTTAGCG | 105 | 4.800295E-7 | 17.619047 | 26 |
GACGCTA | 65 | 0.0015803154 | 17.076923 | 10 |
CGTGATA | 120 | 1.0419535E-7 | 16.958332 | 24 |
GACGGTA | 440 | 0.0 | 16.818182 | 8 |
TATACTG | 275 | 0.0 | 16.818182 | 5 |
AGACGGA | 585 | 0.0 | 16.760685 | 6 |
TACGACG | 455 | 0.0 | 16.67033 | 5 |
GTAAACG | 325 | 0.0 | 16.507692 | 27 |
CGACACG | 90 | 4.447784E-5 | 16.444445 | 36 |