Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042084.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2472422 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 2835 | 0.1146648913494541 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATATCG | 80 | 2.7290298E-8 | 23.125002 | 5 |
ACGGACC | 635 | 0.0 | 20.102362 | 8 |
TAACGCC | 420 | 0.0 | 19.821428 | 4 |
GACGGAC | 640 | 0.0 | 19.367188 | 7 |
TACGACG | 430 | 0.0 | 18.5 | 5 |
TCGTTTA | 400 | 0.0 | 18.0375 | 30 |
AATAACG | 425 | 0.0 | 17.84706 | 2 |
ATAACGC | 475 | 0.0 | 17.526316 | 3 |
GACGGTA | 455 | 0.0 | 17.483517 | 8 |
TATCTAG | 450 | 0.0 | 17.266666 | 1 |
ACGACGG | 465 | 0.0 | 17.107529 | 6 |
CAAGACG | 760 | 0.0 | 17.039474 | 4 |
CGAACGT | 240 | 0.0 | 16.958334 | 4 |
AGACGGA | 765 | 0.0 | 16.928104 | 6 |
AAGACGG | 780 | 0.0 | 16.839743 | 5 |
GGTATCA | 1605 | 0.0 | 16.82866 | 1 |
CGACGGT | 475 | 0.0 | 16.747368 | 7 |
CGCAAGA | 745 | 0.0 | 16.637583 | 2 |
CGCATCG | 460 | 0.0 | 16.48913 | 13 |
GCGCAAG | 720 | 0.0 | 16.444445 | 1 |