Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042076.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5257660 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33711 | 0.6411787753487292 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 29638 | 0.5637108523563715 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 18895 | 0.3593804087750064 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10142 | 0.19289950282064644 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 960 | 0.0 | 18.114582 | 8 |
GACGGAC | 1025 | 0.0 | 16.965853 | 7 |
GGTATCA | 12870 | 0.0 | 16.890055 | 1 |
AAGACGG | 1100 | 0.0 | 16.48182 | 5 |
CGGACCA | 1110 | 0.0 | 16.333334 | 9 |
AATCGTC | 355 | 0.0 | 16.15493 | 28 |
ATTAGAG | 1125 | 0.0 | 16.115555 | 3 |
TTAACGG | 580 | 0.0 | 15.310346 | 35 |
GCGCAAG | 1235 | 0.0 | 15.129554 | 1 |
CGCAAGA | 1165 | 0.0 | 15.085836 | 2 |
GTATTAG | 1790 | 0.0 | 14.9860325 | 1 |
TATACTG | 855 | 0.0 | 14.929825 | 5 |
TCTAGCG | 450 | 0.0 | 14.8 | 28 |
TAACGGC | 625 | 0.0 | 14.504 | 36 |
AGACGGA | 1190 | 0.0 | 14.457983 | 6 |
ATTGACG | 935 | 0.0 | 14.443851 | 32 |
TTTAGCG | 285 | 0.0 | 14.280702 | 26 |
CGTATTA | 390 | 0.0 | 14.230768 | 15 |
GTACTAG | 400 | 0.0 | 13.875001 | 1 |
TAGGTCG | 255 | 1.8189894E-12 | 13.784313 | 21 |