Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042070.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1340763 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10893 | 0.8124478375372829 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10057 | 0.7500952815672867 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3990 | 0.29759174440225455 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3160 | 0.23568669481481816 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 1652 | 0.12321342399812645 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3610 | 0.0 | 22.18975 | 1 |
CGCAAGA | 410 | 0.0 | 22.109756 | 2 |
ACGGACC | 390 | 0.0 | 21.82051 | 8 |
CGCACGT | 45 | 0.0038261344 | 20.555557 | 30 |
TATACTG | 220 | 0.0 | 20.181818 | 5 |
GACGGAC | 420 | 0.0 | 19.821428 | 7 |
CGGACCA | 430 | 0.0 | 19.360464 | 9 |
AAGACGG | 490 | 0.0 | 19.255104 | 5 |
AGACGGA | 470 | 0.0 | 18.893616 | 6 |
GCGCAAG | 475 | 0.0 | 18.305264 | 1 |
ATACTGT | 280 | 0.0 | 17.839285 | 6 |
GTATCAA | 4525 | 0.0 | 17.620995 | 2 |
CGATACG | 85 | 2.723664E-5 | 17.411764 | 26 |
CGAAAGC | 485 | 0.0 | 17.16495 | 19 |
TATACCG | 65 | 0.0015801191 | 17.076923 | 5 |
AACACCG | 65 | 0.0015801191 | 17.076923 | 5 |
CAAGACG | 565 | 0.0 | 16.699116 | 4 |
GCGAAAG | 505 | 0.0 | 16.48515 | 18 |
ATTGACG | 215 | 0.0 | 16.348837 | 32 |
GGCGTTA | 105 | 9.345342E-6 | 15.857142 | 31 |