Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042052.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5328266 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 33401 | 0.6268643494900593 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26034 | 0.4886017327213018 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 25055 | 0.4702280254026357 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9669 | 0.18146616554053419 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9680 | 0.0 | 22.551655 | 1 |
TGCGACG | 250 | 0.0 | 19.24 | 22 |
ACGGACC | 695 | 0.0 | 15.971222 | 8 |
TAGGTCG | 315 | 0.0 | 15.857143 | 21 |
CGGACCA | 760 | 0.0 | 15.335526 | 9 |
TCTAGCG | 630 | 0.0 | 15.269842 | 28 |
GACGGAC | 765 | 0.0 | 14.9934635 | 7 |
GTATCAA | 14650 | 0.0 | 14.951535 | 2 |
CGGTCCA | 690 | 0.0 | 14.746377 | 10 |
CTAGCGG | 640 | 0.0 | 14.742188 | 29 |
AAGACGG | 945 | 0.0 | 14.486773 | 5 |
CGAACGA | 460 | 0.0 | 14.076087 | 16 |
CGCAATA | 680 | 0.0 | 13.875 | 36 |
CGACGAG | 415 | 0.0 | 13.819277 | 24 |
CGACTAT | 175 | 3.5741323E-8 | 13.742858 | 36 |
TATATCG | 380 | 0.0 | 13.631579 | 5 |
TACCGTC | 615 | 0.0 | 13.536586 | 7 |
TCTAACG | 205 | 1.4279067E-9 | 13.536585 | 2 |
AATGCGA | 425 | 0.0 | 13.494118 | 20 |
CGATTTG | 895 | 0.0 | 13.435755 | 28 |