Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042046.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 855381 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 2400 | 0.28057672545918133 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2164 | 0.25298668078902853 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 1880 | 0.21978510160969206 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 600 | 0.0 | 26.208334 | 1 |
AATGCGA | 45 | 1.3228254E-4 | 24.666668 | 20 |
TGCGACG | 50 | 2.7013203E-4 | 22.199999 | 22 |
TATATCG | 45 | 0.0038250193 | 20.555557 | 5 |
TAGACAG | 110 | 1.7535058E-9 | 20.181818 | 5 |
ACAGCGT | 55 | 5.141614E-4 | 20.181818 | 8 |
CGACCAT | 60 | 9.234181E-4 | 18.5 | 10 |
GTCTAAG | 80 | 1.6158829E-5 | 18.5 | 1 |
ATGCGAC | 70 | 1.2187346E-4 | 18.5 | 21 |
TATACTG | 160 | 1.8189894E-12 | 18.5 | 5 |
GTGCTCG | 50 | 0.007033449 | 18.499998 | 1 |
GTATTAG | 195 | 0.0 | 17.076923 | 1 |
ATAGACT | 90 | 4.4438166E-5 | 16.444445 | 4 |
TTATACT | 225 | 0.0 | 16.444445 | 4 |
TAGACTG | 115 | 1.2412092E-6 | 16.086956 | 5 |
GCGTTAT | 70 | 0.0025917666 | 15.857142 | 1 |
TCTAATC | 70 | 0.0025917666 | 15.857142 | 3 |
TAAGACT | 105 | 9.337429E-6 | 15.857142 | 4 |
GTACGCC | 70 | 0.0025917666 | 15.857142 | 36 |
GTTCTAA | 130 | 2.5864938E-7 | 15.653846 | 1 |