Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042043.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2144678 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 5711 | 0.26628706034192545 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5148 | 0.24003603338123486 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 4169 | 0.19438815523822223 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2270 | 0.10584339467276672 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAACGG | 120 | 0.0 | 23.124998 | 35 |
TAACGGC | 135 | 5.638867E-11 | 19.185186 | 36 |
TGTGCGA | 60 | 9.2403736E-4 | 18.5 | 10 |
CTAACGC | 65 | 0.0015805374 | 17.076923 | 3 |
TCTAGCG | 250 | 0.0 | 17.02 | 28 |
GGACCGT | 135 | 2.2222594E-8 | 16.444445 | 6 |
TATACTG | 405 | 0.0 | 15.987655 | 5 |
ACGGACC | 505 | 0.0 | 15.752475 | 8 |
GGTATCA | 2850 | 0.0 | 15.254386 | 1 |
AATCGTC | 110 | 1.4529549E-5 | 15.136364 | 28 |
CTAGCGG | 285 | 0.0 | 14.929826 | 29 |
GTATTAG | 760 | 0.0 | 14.848684 | 1 |
ATACCGT | 375 | 0.0 | 14.799999 | 6 |
CGACGGT | 365 | 0.0 | 14.69863 | 7 |
TGACCCG | 365 | 0.0 | 14.69863 | 13 |
GACGGAC | 520 | 0.0 | 14.586538 | 7 |
AAGACGG | 550 | 0.0 | 14.463636 | 5 |
TACGACG | 385 | 0.0 | 14.415584 | 5 |
ACGACGG | 375 | 0.0 | 14.306666 | 6 |
CGGACCA | 570 | 0.0 | 14.280703 | 9 |