FastQCFastQC Report
Thu 28 Apr 2016
ERR1042037.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042037.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences722756
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC9370.12964264565081438No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGA7420.10266258599029271No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGTT502.700758E-422.19999911
TAACGCC1202.382876E-1020.0416664
TATATGA851.2439996E-619.5882342
TCGAACG851.2439996E-619.5882343
CGAACGT902.1499673E-618.54
ATCAGTA801.615318E-518.57
TATATCG609.2322956E-418.55
ATTCGAA902.1499673E-618.51
GGTATCA3700.018.51
ATAACGC1501.2732926E-1118.53
ATAGTAC701.21840305E-418.53
GTATTAA500.007032418618.4999981
GGTCTAG852.7208522E-517.4117641
AATAACG1401.8644641E-917.1785722
GAATAAC1554.0017767E-1016.7096771
CGCATCG1452.9722287E-916.58620613
AACGCCG1452.9722287E-916.5862065
TAATACC904.4422843E-516.4444454
ATTAGAG904.4422843E-516.4444453
TGGTTAA1951.8189894E-1216.12820637