FastQCFastQC Report
Thu 28 Apr 2016
ERR1042033.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042033.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4765252
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA30150.020.4941961
CCGCGTA1252.963292E-614.8000019
GCGTTAG750.004106926714.81
CCTATAC9250.013.83
GACGGAC6850.013.7737237
TTAGACT10400.013.6971154
ACGGACC6950.013.5755418
GTTAGAC6350.013.4015753
GTATCAA46350.013.3311772
CTAGCGG5150.013.29126329
ATACCGC7400.013.2527
GTATAGG9400.013.186171
TAATACG4550.013.0109884
ATAATAC11850.012.8016873
GTATTAG13650.012.6043971
TCTATAC7800.012.5705123
CGTTATT5300.012.5660382
TAATACT13850.012.5559574
TACCGTC5750.012.5478277
TACACAG13150.012.5209135
Produced by FastQC (version 0.11.5)