Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042031.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5528288 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 23917 | 0.4326294143865153 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19876 | 0.3595326437407024 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 17024 | 0.3079434356531353 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7245 | 0.1310532302224486 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCAAGA | 1195 | 0.0 | 16.100418 | 2 |
ACGGACC | 1170 | 0.0 | 15.337607 | 8 |
AAGACGG | 1315 | 0.0 | 15.334602 | 5 |
GTACTAG | 400 | 0.0 | 15.262501 | 1 |
TCTATAC | 865 | 0.0 | 15.184971 | 3 |
CTAGCGG | 835 | 0.0 | 15.065868 | 29 |
TCTAGCG | 830 | 0.0 | 14.933735 | 28 |
GACGGAC | 1220 | 0.0 | 14.860656 | 7 |
CTACGCT | 100 | 1.0945611E-4 | 14.8 | 4 |
CGAACGA | 560 | 0.0 | 14.205357 | 16 |
CGGACCA | 1280 | 0.0 | 14.1640625 | 9 |
TACCGTC | 900 | 0.0 | 13.9777775 | 7 |
GGTATCA | 10930 | 0.0 | 13.9638605 | 1 |
AGACGGA | 1350 | 0.0 | 13.84074 | 6 |
TTAACGG | 300 | 0.0 | 13.566667 | 35 |
TATACTG | 985 | 0.0 | 13.522841 | 5 |
CGTCGTA | 795 | 0.0 | 13.496855 | 10 |
CGCAATA | 935 | 0.0 | 13.454546 | 36 |
TCGTTTA | 885 | 0.0 | 13.3785305 | 30 |
ATACCGT | 1145 | 0.0 | 13.248908 | 6 |