Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042030.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8171976 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 21974 | 0.26889457335655415 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 16078 | 0.19674556068201865 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 16072 | 0.1966721390273295 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8300 | 0.0 | 17.809036 | 1 |
TATACTG | 1400 | 0.0 | 15.725 | 5 |
TCGTTTA | 1145 | 0.0 | 15.349345 | 30 |
AAGACGG | 1825 | 0.0 | 15.205479 | 5 |
GACGGAC | 1655 | 0.0 | 15.202417 | 7 |
ACGGACC | 1730 | 0.0 | 14.864162 | 8 |
TCTAGCG | 1140 | 0.0 | 14.767544 | 28 |
CTAGCGG | 1160 | 0.0 | 14.353449 | 29 |
CGCAATA | 1255 | 0.0 | 14.151394 | 36 |
CAAGACG | 2060 | 0.0 | 13.919904 | 4 |
AGACGGA | 1995 | 0.0 | 13.631578 | 6 |
ATAACGC | 1560 | 0.0 | 13.51923 | 3 |
CGTTTAT | 1330 | 0.0 | 13.353383 | 31 |
CGAACGA | 735 | 0.0 | 13.340137 | 16 |
TAACGCC | 1415 | 0.0 | 13.33569 | 4 |
TAATACT | 1480 | 0.0 | 13.25 | 4 |
CGCAAGA | 2025 | 0.0 | 13.155556 | 2 |
ACGAACG | 755 | 0.0 | 12.741722 | 15 |
GTATCAA | 11605 | 0.0 | 12.72124 | 2 |
ATACTGT | 1995 | 0.0 | 12.704261 | 6 |