FastQCFastQC Report
Thu 28 Apr 2016
ERR1042030.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042030.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8171976
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT219740.26889457335655415No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT160780.19674556068201865No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT160720.1966721390273295No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA83000.017.8090361
TATACTG14000.015.7255
TCGTTTA11450.015.34934530
AAGACGG18250.015.2054795
GACGGAC16550.015.2024177
ACGGACC17300.014.8641628
TCTAGCG11400.014.76754428
CTAGCGG11600.014.35344929
CGCAATA12550.014.15139436
CAAGACG20600.013.9199044
AGACGGA19950.013.6315786
ATAACGC15600.013.519233
CGTTTAT13300.013.35338331
CGAACGA7350.013.34013716
TAACGCC14150.013.335694
TAATACT14800.013.254
CGCAAGA20250.013.1555562
ACGAACG7550.012.74172215
GTATCAA116050.012.721242
ATACTGT19950.012.7042616