FastQCFastQC Report
Thu 28 Apr 2016
ERR1042028.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042028.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2577037
Sequences flagged as poor quality0
Sequence length43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT212750.825560517757409No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT155400.6030181173184552No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT138040.5356539312396369No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59110.22937194925800444No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT27610.1071385470988581No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA59100.021.6928921
TTAACGG1457.2759576E-1219.1379335
TAGACCG500.007037197218.4999985
CTAATCG1258.592906E-917.7626
TCTAACG1005.883494E-616.652
AATCGTC1557.221388E-915.51612928
GTATTAG7450.015.1476511
CTGTGCG3300.015.1363649
GTCTTAC2700.015.0740751
GCGTAGA750.004106246414.81
CGTTAAC1001.0942013E-414.7999999
CGCACTA2500.014.79999929
CTAGCGG1001.0942013E-414.79999929
GTATCAA87250.014.7575932
ACGGACC2400.014.6458348
CCGTCGT1406.002683E-714.5357159
TAGTCGG1406.002683E-714.53571530
TAACGCC2101.364242E-1014.0952384
AATACTG6600.014.0151515
TAGCGTA800.00630142113.8755