Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042016.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5510546 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 44843 | 0.8137669116635629 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33965 | 0.6163636053487259 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 31644 | 0.5742443670736076 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12547 | 0.22769068618608757 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 14895 | 0.0 | 19.82276 | 1 |
TCTAGCG | 620 | 0.0 | 16.709679 | 28 |
CTAGCGG | 650 | 0.0 | 16.507692 | 29 |
CGAACGA | 640 | 0.0 | 16.476562 | 16 |
ACGGACC | 860 | 0.0 | 15.058139 | 8 |
ACGAACG | 760 | 0.0 | 14.361842 | 15 |
CGCAATA | 740 | 0.0 | 14.25 | 36 |
TTAACGG | 275 | 0.0 | 14.127272 | 35 |
TAACGGC | 290 | 0.0 | 14.034483 | 36 |
GTATCAA | 21040 | 0.0 | 13.9893055 | 2 |
TACGACG | 545 | 0.0 | 13.917431 | 5 |
TACCGTC | 655 | 0.0 | 13.839695 | 7 |
AAGACGG | 980 | 0.0 | 13.780613 | 5 |
GTATTAG | 1480 | 0.0 | 13.75 | 1 |
TCCGATA | 810 | 0.0 | 13.703704 | 8 |
TCTATAC | 705 | 0.0 | 13.6453905 | 3 |
CGAACTA | 300 | 0.0 | 13.566667 | 29 |
CGTCGAA | 110 | 2.4590135E-4 | 13.454545 | 29 |
TAACGAA | 815 | 0.0 | 13.392639 | 13 |
GATAACG | 830 | 0.0 | 13.373494 | 11 |