Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042008.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7194250 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 113303 | 1.574910518817111 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 86417 | 1.2011953991034507 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 69140 | 0.9610452792160405 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26749 | 0.37181082114188413 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8176 | 0.11364631476526393 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7914 | 0.11000451749661189 | No Hit |
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA | 7527 | 0.10462522153108385 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACGGACC | 1235 | 0.0 | 17.076923 | 8 |
GACGGAC | 1240 | 0.0 | 16.858871 | 7 |
GGTATCA | 41865 | 0.0 | 16.279469 | 1 |
CGCCACA | 1410 | 0.0 | 15.74468 | 1 |
GCGAAAG | 1345 | 0.0 | 15.267659 | 18 |
CGGACCA | 1370 | 0.0 | 15.124087 | 9 |
GCGCAAG | 1570 | 0.0 | 14.847134 | 1 |
CGCAAGA | 1460 | 0.0 | 14.5719185 | 2 |
CGCTATA | 115 | 2.2129303E-5 | 14.47826 | 2 |
AAGACGG | 1675 | 0.0 | 14.358209 | 5 |
AGCGAAA | 1450 | 0.0 | 14.034482 | 17 |
TACCGTC | 770 | 0.0 | 13.935064 | 7 |
TATACTG | 1185 | 0.0 | 13.738397 | 5 |
ACAACAC | 3680 | 0.0 | 13.673912 | 3 |
CGAACGA | 690 | 0.0 | 13.673912 | 16 |
AGACGGA | 1510 | 0.0 | 13.599339 | 6 |
GAGCGAA | 1500 | 0.0 | 13.566666 | 16 |
CAAGACG | 1860 | 0.0 | 13.427419 | 4 |
CGAAAGC | 1515 | 0.0 | 13.310231 | 19 |
CGCTTCG | 640 | 0.0 | 13.296875 | 32 |