FastQCFastQC Report
Thu 28 Apr 2016
ERR1041996.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041996.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8772849
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG435050.4959050360948878No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT336700.38379778336547227No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT289870.33041717690570077No Hit
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT285420.3253447084293825No Hit
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG269000.3066278696920465No Hit
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT214280.24425360564167922No Hit
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG211920.24156348752839585No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT185570.21152763486525303No Hit
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT182440.2079598087234831No Hit
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG175320.19984385916137393No Hit
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG145870.16627437677315546No Hit
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG118930.13556599458169175No Hit
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCACTG115550.13171319830080286No Hit
GCTTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTG115280.13140543055055431No Hit
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA115010.13109766280030583No Hit
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA96890.11044302711696052No Hit
GCTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCG95860.10926895014379022No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTAGA25600.015.5371092
TTAACGG19700.015.21319935
TCTAATA21350.014.9039812
GGGGTTA18250.014.6986316
ATTAGAG24300.014.465023
GTATTAG36200.014.4116021
GGGTTAG18750.014.2079997
TAACGGC21050.014.14964336
TAGGACC17500.013.9542864
CTCTAAT21200.013.7004721
TAATACT27800.013.575544
AATACTG27450.013.5464495
GTACTAT14050.013.4306051
TATACTG9850.013.3350265
ATGCTAG18450.013.13550215
GTTTAAC24300.013.09464933
GTTTAGG16500.013.0060611
CACATGT25500.012.91372528
TACCCCG13350.012.8876415
ATAGGGG19500.012.712823