Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041996.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8772849 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTG | 43505 | 0.4959050360948878 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 33670 | 0.38379778336547227 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 28987 | 0.33041717690570077 | No Hit |
GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT | 28542 | 0.3253447084293825 | No Hit |
TTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCG | 26900 | 0.3066278696920465 | No Hit |
CCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTGCGTT | 21428 | 0.24425360564167922 | No Hit |
GAGTACGGGAAGCAGTGGTATCAACGCAGAGTACGGGAAGCAG | 21192 | 0.24156348752839585 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 18557 | 0.21152763486525303 | No Hit |
CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT | 18244 | 0.2079598087234831 | No Hit |
GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG | 17532 | 0.19984385916137393 | No Hit |
TCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGTTG | 14587 | 0.16627437677315546 | No Hit |
GGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAG | 11893 | 0.13556599458169175 | No Hit |
GCGTTGATACCACTGCTTCCCGTACTCTGCGTTGATACCACTG | 11555 | 0.13171319830080286 | No Hit |
GCTTCCCGTACTCTGCGTTGATACCACTGCTTCCCGTACTCTG | 11528 | 0.13140543055055431 | No Hit |
TATCAACGCAGAGTACGGGAAGCAGTGGTATCAACGCAGAGTA | 11501 | 0.13109766280030583 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACGGGAAGCAGTGGTATCAA | 9689 | 0.11044302711696052 | No Hit |
GCTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCG | 9586 | 0.10926895014379022 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATTAGA | 2560 | 0.0 | 15.537109 | 2 |
TTAACGG | 1970 | 0.0 | 15.213199 | 35 |
TCTAATA | 2135 | 0.0 | 14.903981 | 2 |
GGGGTTA | 1825 | 0.0 | 14.698631 | 6 |
ATTAGAG | 2430 | 0.0 | 14.46502 | 3 |
GTATTAG | 3620 | 0.0 | 14.411602 | 1 |
GGGTTAG | 1875 | 0.0 | 14.207999 | 7 |
TAACGGC | 2105 | 0.0 | 14.149643 | 36 |
TAGGACC | 1750 | 0.0 | 13.954286 | 4 |
CTCTAAT | 2120 | 0.0 | 13.700472 | 1 |
TAATACT | 2780 | 0.0 | 13.57554 | 4 |
AATACTG | 2745 | 0.0 | 13.546449 | 5 |
GTACTAT | 1405 | 0.0 | 13.430605 | 1 |
TATACTG | 985 | 0.0 | 13.335026 | 5 |
ATGCTAG | 1845 | 0.0 | 13.135502 | 15 |
GTTTAAC | 2430 | 0.0 | 13.094649 | 33 |
GTTTAGG | 1650 | 0.0 | 13.006061 | 1 |
CACATGT | 2550 | 0.0 | 12.913725 | 28 |
TACCCCG | 1335 | 0.0 | 12.887641 | 5 |
ATAGGGG | 1950 | 0.0 | 12.71282 | 3 |