Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041990.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2228693 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8755 | 0.3928311346605387 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7703 | 0.34562858141520614 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5650 | 0.2535118116313014 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2349 | 0.10539809655255344 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2695 | 0.0 | 25.742115 | 1 |
GTATCAA | 4185 | 0.0 | 16.532856 | 2 |
TGCGACG | 80 | 3.3843477E-4 | 16.1875 | 22 |
GAACCGT | 80 | 3.3843477E-4 | 16.1875 | 6 |
ACGAACG | 150 | 8.1114194E-8 | 14.8 | 29 |
TCTTATA | 2565 | 0.0 | 14.497076 | 37 |
CGAACTA | 485 | 0.0 | 14.494845 | 24 |
GTACGTA | 230 | 1.8189894E-12 | 14.478261 | 13 |
TACCGAC | 155 | 1.2116288E-7 | 14.32258 | 7 |
ATACCGT | 105 | 1.6567322E-4 | 14.095238 | 6 |
GCGAACT | 505 | 0.0 | 13.920792 | 23 |
GATCGGA | 80 | 0.0063010673 | 13.875001 | 1 |
GGTCTAA | 80 | 0.0063010673 | 13.875001 | 1 |
TTTAGCG | 135 | 6.5731256E-6 | 13.703703 | 26 |
ATACCGA | 135 | 6.5731256E-6 | 13.703703 | 6 |
TACCCGC | 205 | 1.4260877E-9 | 13.536586 | 11 |
CTCTAAT | 555 | 0.0 | 13.333333 | 1 |
GGCACCG | 640 | 0.0 | 13.296876 | 9 |
TACCCCG | 450 | 0.0 | 13.155556 | 5 |
ATAGACC | 85 | 0.009408354 | 13.058824 | 4 |