FastQCFastQC Report
Thu 28 Apr 2016
ERR1041986.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041986.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18477649
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA67400.022.2329391
CTTATAC122150.017.41710937
TCTTATA213100.015.96503937
GTATCAA111050.013.6771731
CTCTTAT332400.013.2572237
TATACCG6200.012.23387055
TATACTG34400.012.2078495
TCAACGC153550.012.204823
ATCAACG153900.012.0808972
CAACGCA159150.011.8102434
GTATTAG34450.011.7605221
TTAGACT19000.011.3921054
TATCAAC168250.011.2264491
TAATACT46500.011.179574
CTAATAC36650.011.1555253
AACGCAG170850.011.1314025
ATAATAC32850.010.86910253
TCTATAC24500.010.6469383
AGTACCG14850.010.5892265
ATAGTAC29150.010.34476953
Produced by FastQC (version 0.11.5)