FastQCFastQC Report
Thu 28 Apr 2016
ERR1041980.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041980.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10035804
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA35550.021.1800271
CTTATAC54400.017.03768337
TCTTATA91300.015.27820337
GTATCAA51050.014.4593532
TATACTG13950.012.7311825
CTCTTAT139750.012.43041237
TCTATAC9950.012.0854273
TCAACGC70800.011.9936443
ATCAACG70000.011.9457152
CAACGCA73900.011.5155624
GTACTAG6600.011.4924241
GTATTAA14550.011.1890041
AACGCAG78750.010.9707945
GTATTAG15350.010.9674261
TAGACTA5750.010.9391315
TATCAAC76450.010.9378671
TAGACAG16200.010.8487655
ATAATAC14850.010.8383843
CTACACT15850.010.7381724
TACCCCG8300.010.47590355
Produced by FastQC (version 0.11.5)