Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041978.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3456791 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8957 | 0.25911314858202306 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8501 | 0.24592172335556303 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 6412 | 0.18548995296504764 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3480 | 0.0 | 21.9023 | 1 |
TATACCG | 145 | 1.546141E-10 | 17.862068 | 5 |
CTTATAC | 3195 | 0.0 | 16.444445 | 37 |
TCTTATA | 5450 | 0.0 | 16.022018 | 37 |
GTATCAA | 5185 | 0.0 | 14.700096 | 2 |
GTCTTAC | 175 | 3.572677E-8 | 13.742858 | 1 |
CTCTTAT | 8555 | 0.0 | 13.082993 | 37 |
TACACCG | 250 | 1.6007107E-10 | 12.580001 | 5 |
TATACAC | 1240 | 0.0 | 12.383064 | 37 |
TTAGACT | 300 | 2.3646862E-11 | 11.716667 | 4 |
GTATTAA | 460 | 0.0 | 11.663043 | 1 |
GTATTAG | 655 | 0.0 | 11.5801525 | 1 |
GTACTAG | 240 | 1.4882971E-8 | 11.562501 | 1 |
GACCGTG | 410 | 0.0 | 11.280488 | 7 |
ATCAACG | 7520 | 0.0 | 11.218085 | 2 |
TACACTG | 695 | 0.0 | 11.179856 | 5 |
TCTCTTA | 12530 | 0.0 | 11.147245 | 37 |
CAACGCA | 7735 | 0.0 | 11.049773 | 4 |
TCAACGC | 7735 | 0.0 | 11.025856 | 3 |
TATCAAC | 7695 | 0.0 | 10.987005 | 1 |