Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041973.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4554944 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13595 | 0.2984668966292451 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6111 | 0.1341619128577651 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 5266 | 0.11561064197496171 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTATAC | 5900 | 0.0 | 17.088984 | 37 |
CGCGAAA | 110 | 1.4536681E-5 | 15.136364 | 15 |
GTATTAG | 1335 | 0.0 | 14.827716 | 1 |
TCTATAC | 480 | 0.0 | 14.260417 | 3 |
TAATACT | 1330 | 0.0 | 14.18797 | 4 |
AGTACCG | 620 | 0.0 | 14.024194 | 5 |
CGAACTA | 665 | 0.0 | 13.631579 | 24 |
GTATAGA | 600 | 0.0 | 13.566666 | 1 |
AACGCAG | 10525 | 0.0 | 13.095012 | 5 |
TCTTATA | 8710 | 0.0 | 13.020092 | 37 |
TATACAC | 1915 | 0.0 | 12.945169 | 37 |
GTATTAA | 510 | 0.0 | 12.696078 | 1 |
TCTAATA | 1150 | 0.0 | 12.547826 | 2 |
GGTATCA | 6440 | 0.0 | 12.524845 | 1 |
GGTAAAC | 725 | 0.0 | 12.5034485 | 35 |
TACGCAG | 135 | 9.972589E-5 | 12.333333 | 5 |
GGACCGT | 255 | 2.237357E-10 | 12.333333 | 6 |
CTCTAAT | 900 | 0.0 | 12.333333 | 1 |
ATACCTT | 885 | 0.0 | 12.333333 | 6 |
CTAATAC | 1285 | 0.0 | 12.237354 | 3 |