Basic Statistics
Measure | Value |
---|---|
Filename | ERR1041970.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3570081 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3962 | 0.11097787417148237 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTATAC | 4120 | 0.0 | 19.26335 | 37 |
CGACTAA | 165 | 3.6379788E-12 | 17.939394 | 37 |
TACGTCG | 105 | 4.80426E-7 | 17.619047 | 21 |
TCGCTAA | 225 | 0.0 | 15.622222 | 14 |
TAAGACA | 570 | 0.0 | 14.605264 | 4 |
GTATTAG | 1130 | 0.0 | 14.570797 | 1 |
TTAGACT | 385 | 0.0 | 14.415584 | 4 |
TAATACT | 1030 | 0.0 | 14.368933 | 4 |
CTCGCTA | 260 | 0.0 | 14.230769 | 13 |
CTAATAC | 1040 | 0.0 | 14.230769 | 3 |
ATTAGAG | 710 | 0.0 | 14.070422 | 3 |
TATTAGA | 935 | 0.0 | 13.850266 | 2 |
TCTTATA | 6365 | 0.0 | 13.835034 | 37 |
GGTATCA | 2525 | 0.0 | 13.774258 | 1 |
TTAACGG | 515 | 0.0 | 13.650486 | 35 |
CGTATAC | 150 | 1.3075896E-6 | 13.566667 | 3 |
AGTTCGC | 450 | 0.0 | 13.566667 | 8 |
CTAAACT | 900 | 0.0 | 13.361112 | 4 |
TAGTACG | 360 | 0.0 | 13.361111 | 4 |
GTCTATA | 250 | 1.0913936E-11 | 13.32 | 1 |