FastQCFastQC Report
Thu 28 Apr 2016
ERR1041965.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1041965.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences327707
Sequences flagged as poor quality0
Sequence length43
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT58451.783605476843644No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT50831.5510806909831039No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT31500.9612245084786105No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG18650.5691059391468599No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAA17500.5340136158214502No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG14000.42721089265716017No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT12580.3838795021162197No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT12000.36618076513470876No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC11030.33658115328631977No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG10300.314305156740625No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT8160.24900292029160195No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG8060.2459514139154794No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7380.2252011705578459No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7340.22398056800739685No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC7340.22398056800739685No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA5330.16264528984733315No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5300.16172983793449638No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGT5260.16050923538404735No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC5190.15837318092076152No Hit
GAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA4790.14616715541627123No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT4760.14525170350343447No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG4710.14372595031537316No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC4610.1406744439392506No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG4520.1379280882007403No Hit
CAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA4420.13487658182461773No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC4410.13457143118700546No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT4390.13396112991178097No Hit
GAAGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA4340.13243537672371966No Hit
GAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA4150.1266375146090868No Hit
AAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG4150.1266375146090868No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3900.11900874866878033No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGA3590.10954907890280037No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT3460.10558212061384101No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT3420.10436151806339199No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG3410.10405636742577974No Hit
GAAGCAGTTGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAA3290.10039455977443265No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAATAC200.001840016837.03
GTAGAGC200.001840016837.03
TGCCTAG303.5939144E-430.83333237
TAAGACT556.238806E-726.909094
GCGAACT358.855815E-426.4285723
AGCGAAC358.855815E-426.4285722
AAAGCGA358.855815E-426.4285720
GTACGGT358.855815E-426.4285711
TAATACT809.731593E-1025.43754
GGATTAC451.3203936E-424.6666681
GCCAAGC901.4188117E-1024.66666837
CGAACTA400.001928258323.12524
TAGACTA400.001928258323.1255
CAGTCAA400.001928258323.12515
TAACTAC400.001928258323.12510
CAAAGCG400.001928258323.12519
GATAAGA502.6963942E-422.22
GGTAATA806.9289126E-720.81252
CGTAGTC450.003820060320.55555716
CTTGCGG450.003820060320.55555734